Prompt Position Is Policy: The Silent Merge Conflict When Three Teams Co-Own a System Prompt
The diff in your prompt repo says three lines changed. The behavioral diff in production says everything changed. The safety team moved a refusal rule from line 14 to line 87 to "group it with related guardrails," the product team didn't notice because the wording was identical, and a week later the eval suite is showing a 9-point drop on adversarial inputs. Nobody edited the rule. Somebody moved it. In a 2,400-token system prompt with primacy bias on guardrails and recency bias on instruction-following, moving a rule is a behavioral change as load-bearing as rewriting it — and your tooling surfaces neither.
This is the merge-conflict pattern that AI teams discover at the end of a regression review, not the beginning of one. The system prompt grew past 2K tokens sometime in late 2025. The safety team owns the top, the product team owns the middle, the agent team owns the bottom, and three months of "small edits" have silently rearranged everyone else's intent because the line-based diff tool that worked fine for code can't tell you that an instruction crossed a section boundary. The bug isn't in any single edit. The bug is that position is now policy, and you have no policy on position.
